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Clustal

Clustal

Description

ClustalO and ClustalW are multiple sequence alignment programs for nucleotide and protein sequences. Clustal uses a method called pairwise progressive sequence alignment. This heuristic method first does a pairwise sequences alignment for all the sequence pairs that can be constructed from the sequence set. A dendrogram (guide tree) of the sequences is then done according to the pairwise similarity of the sequences. Finally a multiple sequence alignment is is constructed by aligning sequences in the order, defined by the guide tree.


Available

Version on CSC's Servers

Taito: Clustal Omega 1.2.1
Taito: ClustalW 2.1
Taito: ClustalX 2.1


Usage

In Taito, you can start ClustalO with command:

clustalo

sample command:

clustalo -i my-in-seqs.fa -o my-out-seqs.fa -v

ClustalW is starterd with command:

clustalw

In NoMachine remote desktop you can start clustalx with command:

clustalx2


Discipline

Biosciences

References


Support


Manual