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ExaML

ExaML

Description

Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI. (Implement RAxML)


Available

Version on CSC's Servers

Taito: 1.0.2, 3.0.17

 


Usage

To use ExaML in Taito we first have to set up the correct compiler environment:

module purge
module load gcc/4.7.2
module load intelmpi/4.1.0

We can then load the ExaML module:

module load examl

For information on setting up batch jobs in Taito see the Taito User Guide.


Discipline

Biosciences

References

Stamatakis, A.; Aberer, A.J., "Novel Parallelization Schemes for Large-Scale Likelihood-based Phylogenetic Inference," Parallel & Distributed Processing (IPDPS), 2013 IEEE 27th International Symposium on , vol., no., pp.1195,1204, 20-24 May 2013
doi: 10.1109/IPDPS.2013.70


Support

helpdesk@csc.fi


Manual

ExaML homepage