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Illumina BaseSpace

Illumina BaseSpace

Description

Illumina BaseSpace command line client, bs, can be used to retrievie data from the Illumina BaseSpace environment to Taito.


Available

Version on CSC's Servers

Illumina BaseSpace command line client is available in Taito


Usage

The Illumina BaseSpace command line client starts with command:

bs

To be able to use this service you must have an account in the Illumina Base Space service.

As the first step you must set up your authentication so that you can access your data in Illumina BaseSpace. This is done by running command:

bs auth

The authentication information is stored to your home directory in Taito
($HOME/.basespace/default.cfg). Thus the authentication needs to be done only
once.

After that you can start working with your Illumina data. For example, available datasets can be listed with command:

bs list datasets

Single dataset can be downloaded to Taito with command:

bs download dataset -i dataset_id -o local_download_dir


Discipline

Biosciences

References


Support


Manual

More detailed information about using Illumne BaseSpace client can be found form the links below :

https://developer.basespace.illumina.com/docs/content/documentation/cli/cli-examples
https://developer.basespace.illumina.com/docs/content/documentation/cli/cli-overview