Illumina BaseSpace command line client, bs, can be used to retrievie data from the Illumina BaseSpace environment to Taito.
Version on CSC's Servers
Illumina BaseSpace command line client is available in Taito
The Illumina BaseSpace command line client starts with command:
To be able to use this service you must have an account in the Illumina Base Space service.
As the first step you must set up your authentication so that you can access your data in Illumina BaseSpace. This is done by running command:
After that you can start working with your Illumina data. For example, available datasets can be listed with command:
bs list datasets
Single dataset can be downloaded to Taito with command:
bs download dataset -i dataset_id -o local_download_dir
More detailed information about using Illumne BaseSpace client can be found form the links below :