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Calculate and plot the RMSD widget
Leif Laaksonen CSC 1997
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If a molecular dynamics trajector is defined it is possible to plot the Root Mean Square Deviation (RMSD) of a selected set of atoms as ellipsoids. The plot is always in the global x, y, z coordinate system.
Select the atoms and press the apply button. There are two different approaches to generate the ellipsoids:
The plot can be deleted by pressing the Delete button. If the fluctuation has a small amplitude it is possible to magnify the amplitude by a factor.
Line command: p_rmsd Segment Residue Atom(s) Scale fit/nofit
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LUL/1997
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