Learning Materials for Bioscientists
Course materials, eLearning materials, tutorials and webinar recordings for bioscientists.
New: Now also available: RNA-seq pipeline tutorial!
General skills:
- Using cPouta cloud for bioinformatics [course materials]
- Computing intensive bioinfomatics analysis on Taito [course materials]
- Introduction to BioPython [course material]
- Python environment in CSC computers [webinar recording]
- Introduction to base R [course material]
- Data visualisation using RStudio and ggplot [course material]
- Data analysis and wrangling with R [course material]
- How to run command line R and GUI based RStudio at CSC [webinar recording]
Application focussed:
- VirusDetect pipeline [course material] [webinar recording]
- Variant analysis with GATK [course material] [video lectures]
- Metagenomics data analysis [course material] [video lectures] [pipeline]
- RNA-seq data analysis [course material] [pipeline]
Chipster:
- Single cell RNA-seq data analysis using Chipster [course materials] [video lectures]
- RNA-seq data analysis using Chipster [course materials] [video lectures and tutorials] [webinar recording][tutorial]
- Virus detection using small RNA-seq [course materials] [webinar recording]
- Community analysis using 16S rRNA data [course materials]
- Detection and annotation of genomics variants [course materials]
- ChIP-seq data analysis [course materials]
- Microarray data analysis [course materials]